Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015936588.1_cds_XP_016482101.1_73363
CDS Infomation

[gene=LOC107803018] [db_xref=GeneID:107803018] [protein=probable linoleate 9S-lipoxygenase 5 isoform X2] [protein_id=XP_016482101.1] [location=join(12065..12296,12876..13165,13627..13867,14008..14343,14449..14534,14616..14723,14880..15184,15281..15544,15628..16396)] [gbkey=CDS]
Sequence

ATGCTGGACAAATTGCTTCAAGTGGTTTGTGGCAAGAACCATGAGCCTACAATAGAAGAT
AACAACTTTAACAATAATACCAATGGGAAGAAAGTCAGAGGGACAGTTGTATTGATGAAA
AAGAATGTATTGGACTTGAAGGATGTTGGTGCTTCTTTCCTTGATAGAGTTCATGAAGTC
TTTGGCAAAGGTGTCTCTTTGCAGCTCATCAGTGCTGACCATGCAGAATCTGGAAATGGA
TGTAAAGGGAAGTTGGGAAAACCAGCATTCTTGGAGAAATGGATGTCCACTTTGACTTCA
ATATCAGCGGGAGATGCTACATTTAATGTGACATTTGACTGGGATGAGTCCATGGGAGTT
CCTGGAGCTTTCATAATCAAAAACTATCACCACAGCCAGTTTTACCTCAGGACAGTCATT
TTAGAAGATGTTCCTGGACATGGTCAACTTCATTTTGTGTGTAATTCATGGGTGTATCCA
GCACATCGCTACAAATACAACCGAGTATTTTTTTCAAACAAGACATACCTGCCAAGCAAC
ACACCGGAACCCCTTCGACCATACAGGGAAGAGGAGCTTCTTAATCTTCGTGGAAGCGGT
TCAGGCATGCTCAAGGAGTGGGACAGAGTGTATGATTATGCATTCTACAATGATCTAGGA
TTTCCAGATAAGGGGCCGGAATCTGTTCGTCCTGTGCTTGGTGGGTCGAAGGAATACCCA
TATCCTCGTAGAGGCAGGACAAGCCGTCGACCAACTAAAACAGATCCTAACTCAGAGAGC
CGGTTGCCACCTTTAGGTTTGAACATATATGTTCCACGGGACGAACGTTTCACTCATGTG
AAGCTTTCGGATTTCCTTGCATATGCTGTTAAATCTCTGGGTCAGGTCCTCATTCCTGAG
ATTGTTGCTTTATTTGACAAAACCTTCAACGAGTTTGATAGCTTTGAAGACGTACTCAAG
CTCTATGAAGGTGGAATTAAGCTGCCTGACCATCATTTAAACAAACTCAGGCAATGTATC
CCATGGGAGATGCTCAAAGAACTAGTCCGCTCCGATGGTGAACCATTTCTCAAATTTCCG
ATGCCTGATGTAATCAAAGTGGATAGGTCTGCCTGGAGGACAGATGAAGAGTTTGGACGG
GAAATGCTAGCTGGAGTCAACCCTGTTATCATTCGACGTCTTCAGGAGTTTCCCCCAGCT
AGCAAGTTGGATCCTAAAGTATATGGTAATCAGACCAGTTCAATCACAAGGGAGGACATA
GAGAAAAACATGGATGAACTAACTGTAGATGAAGCAATTGAGTATAATAAGCTCTTCATT
TTGGACCATCATGATGCGTTGATGCCTTATCTCAGACGGATTAATACAACAAATACAAAG
ACGTATGCCAGTCGGACTCTCCTTTTTCTTCAAGATAATGGAACATTGAGGCCACTTGCA
ATTGAGTTGAGCTTACCTCATCCACAAGGAGATAAACATGGTGCCACCAGCCTTGTATTT
ACACCAGCCGACGAAGGTGTTGAAGGCTCTGTCTGGCAGCTGGCCAAAGCTTATGCCGCT
GTAAATGACTCTGGCTATCATCAGCTCGTCAGTCATTGGTTAAATACTCATGCAGTTATA
GAGCCATTTGTGATTGCTACAAATAGACATTTGAGCGTACTTCATCCAATATTCAAGCTA
TTACAACCTCATTTCCGCGATACCATGTATATTAATGCTTTGGCTCGGCAGATTCTCATA
AATGCAGGTGGAGTACTTGAGCTGACAGTTTTTCCGGGTAAATATGCCATGGAGATGTCT
TCTATTGTCTATAAGAACTGGGTGTTCACCGAGCAAGGACTCCCTGCTGATCTGCTTAAG
AGAGGAGTAGCAGTGCCAGACTCAAGCCAGCCCTTTGGCCTTAGACTTCTAATAGAGGAT
TATCCTTTTGCTGTAGATGGGCTTGAGATCTGGTCAGCAATTGAAGCCTGGGTAAATGAC
TACTGTTCATTCTATTACCCAACAGACGACATGATCCAAGATGATACTGAGCTCCAGTCA
TGGTGGACGGAAGTTCGCAATGAAGGTCATGGTGACTTGAAAGATGAACCATGGTGGCCT
CAGATGCAGACCCGAGCTGAACTCGCCGAAGCATGCACAATTATCATATGGGTAGCTTCT
GCTCTTCACGCAGCTGTCAACTTCGGGCAGTATCCTTATGCTGGTTACCTCCCAAATCGC
CCAACCGTAAGCCGCCGATTCATGCCTGAGCCAGGCACCCCTGAATATGCTGAGCTTGAG
TCAAACCCTGACCTTGCCTTCCTGAAGACAATCACAGCCCAGTTCCAAACTCTGCTAGGT
GTTTCTTTAATAGAAATATTGTCACGACATTCTTCAGATGAGATATATCTGGGACAGAGA
GATACTCCCGAGTGGACCTCAGATATTCAACCGCGACAGGCATTTCAAAGATTCCATGAC
AGATTAGTCGAAGTGGAGAACAGAATAGTGGAAAGGAACAATGACAGCAGATGGAAGAAT
CGCAACGGACCAGTAAAGGTGCCATATATGTTGCTATACCCCAATGCCTCAGGTGACAAT
AGTGAAAGTGGACTTACTGGAAAAGGAATTCCCAATAGTGTCTCAATTTGA

Peptide Sequence

PEP ID

XP_016482101.1
PEP Infomation

PREDICTED: probable linoleate 9S-lipoxygenase 5 isoform X2 [Nicotiana tabacum]
Sequence

MLDKLLQVVCGKNHEPTIEDNNFNNNTNGKKVRGTVVLMKKNVLDLKDVGASFLDRVHEV
FGKGVSLQLISADHAESGNGCKGKLGKPAFLEKWMSTLTSISAGDATFNVTFDWDESMGV
PGAFIIKNYHHSQFYLRTVILEDVPGHGQLHFVCNSWVYPAHRYKYNRVFFSNKTYLPSN
TPEPLRPYREEELLNLRGSGSGMLKEWDRVYDYAFYNDLGFPDKGPESVRPVLGGSKEYP
YPRRGRTSRRPTKTDPNSESRLPPLGLNIYVPRDERFTHVKLSDFLAYAVKSLGQVLIPE
IVALFDKTFNEFDSFEDVLKLYEGGIKLPDHHLNKLRQCIPWEMLKELVRSDGEPFLKFP
MPDVIKVDRSAWRTDEEFGREMLAGVNPVIIRRLQEFPPASKLDPKVYGNQTSSITREDI
EKNMDELTVDEAIEYNKLFILDHHDALMPYLRRINTTNTKTYASRTLLFLQDNGTLRPLA
IELSLPHPQGDKHGATSLVFTPADEGVEGSVWQLAKAYAAVNDSGYHQLVSHWLNTHAVI
EPFVIATNRHLSVLHPIFKLLQPHFRDTMYINALARQILINAGGVLELTVFPGKYAMEMS
SIVYKNWVFTEQGLPADLLKRGVAVPDSSQPFGLRLLIEDYPFAVDGLEIWSAIEAWVND
YCSFYYPTDDMIQDDTELQSWWTEVRNEGHGDLKDEPWWPQMQTRAELAEACTIIIWVAS
ALHAAVNFGQYPYAGYLPNRPTVSRRFMPEPGTPEYAELESNPDLAFLKTITAQFQTLLG
VSLIEILSRHSSDEIYLGQRDTPEWTSDIQPRQAFQRFHDRLVEVENRIVERNNDSRWKN
RNGPVKVPYMLLYPNASGDNSESGLTGKGIPNSVSI

Transcript Sequence

Gene sequence data has not been registered.